Publications

Title
Authors
Source
Year
Links
Intra-Domain Task-Adaptive Transfer Learning to Determine Acute Ischemic Stroke Onset TimeZhang H, Polson JS, Nael K, Salamon N, Yoo B, El-Saden S, Scalzo F, Speier W, Arnold CWComputerized Medical Imaging and Graphics2021  
Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data to Predict DepressionMeng Y, Speier W, Ong M, Arnold CWIEEE Journal of Biomedical and Health Informatics2021In press
Optimizing Spatial Biopsy Sampling for the Detection of Prostate CancerRaman AG, Sarma KV, Raman S, Priester A, Mirak S, Riskin-Jones H, Dhinagar N, Speier W, Felker E, Sisk A, Lu D, Kinnaird A, Reiter R, Marks L, Arnold CWThe Journal of Urology2021In press
A Multi-resolution Model for Histopathology Image Classification and Localization with Multiple Instance LearningLi J, Li W, Sisk A, Ye H, Wallace W, Speier W, Arnold CWComputers in Biology and Medicine2021  
Federated Learning Improves Site Performance in Multi-Center Deep Learning Without Data SharingSarma K, Harmon S, Sanford T, Roth H, Xu Z, Tetreault J, Xu D, Flores M, Raman A, Kulkarni R, Wood B, Choyke P, Priester A, Marks L, Raman S, Enzmann D, Turkbey B, Speier W, Arnold CWJournal of the American Medical Informatics Association2021   
Semi-automated PIRADS Scoring via mpMRI AnalysisDhinagar N, Speier W, Sarma K,
Raman A, Kinnaird A, Raman S, Marks L, Arnold CW
SPIE Journal of Medical Imaging2020  
Integrating Remote Monitoring into Heart Failure Patients' Care Regimen: A Pilot StudySohn A, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold CWPLOS ONE2020   
Biometric and Psychometric Remote Monitoring is Associated with Cardiovascular Risk Biomarkers in Ischemic Heart DiseaseShufelt C, Kim A, Joung S, Barsky L, Arnold CW, Cheng S, Dhawan S, Fuller G, Speier W, Lopez M, Mastali M, ouapi KN, van den Broek I, Wei J, Spiegel B, Van Eyk J, Bairey-Merz CNJournal of the American Heart Association2020   
Classifying Breast Histopathology Images with Ductal Instance-oriented PipelineLi B, Mercan E, Mehta S, Knezevich S, Arnold CW, Weaver D, Elmore J, Shapiro LInternational Conference on Pattern Recognition2020  
Semi-supervised Learning using Adversarial Training with Good and Bad Samples
Li W, Wang Z, Yue Y, Li J, Speier W, Zhou M, Arnold CW
Machine Vision and Applications
2020
  
HCET: Hierarchical Clinical Embedding with Topic Modeling on Electronic Health Records for Predicting Depression
Meng Y, Speier W, Ong M, Arnold CW
IEEE Journal of Biomedical and Health Informatics
2020
  
Toward Heterogeneous Information Fusion: Bipartite Graph Convolutional Networks for In Silico Drug Repurposing
Wang Z, Zhou M, Arnold CW
Bioinformatics
2020
  
An electronic form for reporting results of targeted prostate biopsy: Urology Integrated Diagnostic Report (Uro-IDR)
Guorgui J, Kinnaird A, Jayadevan R, Priester A, Arnold CW, Marks LS
Urology
2020
  
LSTM Network for Prediction of Hemorrhagic Transformation in Acute Stroke
Yu Y, Parsi B, Speier W, Arnold CW, Lou M, Scalzo F
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
2019
  
Assessment of Heart Failure Patients' Interest in Mobile Health Apps for Self-Care: Survey Study
A Sohn, Speier W, Lan E, Aoki K, Fonarow G, Ong M, Arnold CW
Journal of Medical Internet Research Cardio
2019
  
A Machine Learning Approach to Classifying Self-Reported Health Status in a cohort of Patients with Heart Disease using Activity Tracker Data
Meng Y, Speier W, Shufelt C, Joung S, Van Eyk JE, Bairey Merz CN, Lopez M, Spiegel B, Arnold CW
IEEE Journal of Biomedical and Health Informatics
2019
  
Estimating the Health-Related Quality of Life of Twitter Users Using Semantic Processing
Sarma KV, Spiegel B, Reid M, Chen S, Merchant R, Seltzer E, Arnold CW
Proc. of the International Medical Informatics Association 2019 Meeting (MEDINFO)
2019
  
An Attention-Based Multi-Resolution Model for Prostate Whole Slide Image Classification and Localization
Li J, Li W, Gertych A, Knudsen BS, Speier W, Arnold CW
Conference on Computer Vision and Pattern Recognition (CVPR) Towards Causual, Explainable and Universal Medical Visual Diagnosis Workshop
2019

Semi-Supervised Learning Based on Generative Adversarial Network: a Comparison Between Good GAN and Bad GAN Approach
Li W, Wang Z, Li J, Polson J, Speier W, Arnold CW
Conference on Computer Vision and Pattern Recognition (CVPR) Weakly Supervised Learning for Real-World Computer Vision Applications Workshop
2019

Predicting Ischemic Stroke Tissue Fate Using a Deep Convolutional Neural Network on Source MR Perfusion Imaging
Ho KC, Scalzo F, Sarma KV, Speier W, El-Saden S, Arnold CW
Journal of Medical Imaging
2019
  
A Machine Learning Approach for Classifying Ischemic Stroke Onset Time from Imaging
Ho KC, Speier W, Zhang H, Scalzo F, El-Saden S, Arnold CW
IEEE Transactions on Medical Imaging
2019
  
Prediction of Clinically Significant Prostate Cancer in MR/Ultrasound Guided Fusion Biopsy using Multiparametric MRI
Shi W, Sarma KV, Raman AG, Priester AM, Natarajan S, Speier W, Raman S, Marks L, Arnold CW
Neural Information Processing Systems (NeurIPS) Medical Imaging Meets NeurIPS Workshop
2018

Semi-supervised Rare Disease Detection Using Generative Adversarial Network
Li W, Wang Y, Arnold CW, Zhao E, Yuan Y
Neural Information Processing Systems (NeurIPS) Machine Learning for Health (ML4H) Workshop
2018
  
Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images
Li W, Li J, Sarma KV, Ho KC, Shen S, Knudsen BS, Gertych A, Arnold CW
IEEE Transactions on Medical Imaging
2018
    
An EM-based Semi-supervised Deep Learning Approach for Semantic Segmentation of Histopathological Images from Radical Prostatectomies
Li J, Speier W, Ho KC, Sarma KV, Gertych A, Knudsen B, Arnold CW
Computerized Medical Imaging and Graphics
2018
  
Evaluating Utility and Compliance in a Patient-based eHealth Study using Continuous-time Heart Rate and Activity Trackers.
Speier W, Dzubur E, Zide M, Shufelt C, Joung S, Van Eyk JE, Merz CNB, Lopez M, Spiegel B, Arnold CW
Journal of the American Medical Informatics Association
2018
  
Semantic Segmentation for Prostate Cancer Grading by Convolutional Neural Networks
Ing N, Ma Z, Li J, Salemi H, Arnold CW, Knudsen B, Gertych A
SPIE Medical Imaging
2018
  
A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies
Finalist, Best Student Paper Award
Li J, Sarma KV, Ho KC, Gertych A, Knudsen B, Arnold CW
Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
2017
  
Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features
Winner, Best Student Paper Award
Ho KC, Speier W, El-Saden S, Arnold CW
Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
2017
  
Source-LDA: Enhancing Probabilistic Topic Models using Prior Knowledge Sources
Wood J, Tan P, Das A, Wang W, Arnold CW
Proc. of the IEEE International Conference on Data Engineering
2016
  
A Temporal Deep Learning Approach for MR Perfusion Parameter Estimation in Stroke
Ho KC, Scalzo F, Sarma K, El-Saden S, Arnold CW
Proc. of the International Conference on Pattern Recognition
2016
  
Using Phrases and Document Metadata to Improve Topic Modeling of Clinical Reports
Speier W, Ong MK, Arnold CW
Journal of Biomedical Informatics
2016
  
Consumers' Patient Portal Preferences and Health Literacy: A Survey Using Crowdsourcing
McNamara M, Caswell K, Peterson E, Aberle DR, Bui AAT, Arnold CW
Journal of Medical Internet Research Research Protocols
2016
  
Evaluating Topic Model Interpretability from a Primary Care Physician Perspective
Arnold CW, Oh A, Chen X, Speier W
Computer Methods and Programs in Biomedicine
2016
  
RadPath: A Web-based System for Integrating and Correlating Radiology and Pathology Findings During Cancer Diagnosis
Arnold CW, Wallace WD, Chen S, Oh A, Abtin F, Genshaft S, Binder S, Aberle D, Enzmann D
Academic Radiology
2016
  
Imaging-histologic Discordance at Percutaneous Biopsy of the Lung
Oh A, Arnold CW, Vangala S, Wallace WD, Genshaft S, Sarma K, Aberle D
Academic Radiology
2015
  
Patient Portal Preferences: Perspectives on Imaging Information McNamara M, Arnold CW, Sarma K, Garon E, Aberle D, Bui AAT
Journal of the Association for Information Science and Technology
2013
  
Predicting Discharge Mortality after Acute Ischemic Stroke
Finalist, Best Student Paper Award
Ho KC, Speier W, El-Saden S, Liebeskind DS, Saver JL, Bui AAT, Arnold CW
Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
2014
  
A Data Model for Personalized Patient Health Guidelines: An Exploratory Study
McNamara M, Sarma K, Aberle D, Bui AAT, Arnold CW
Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
2014
  
Imaging Informatics for Consumer Health: Towards a Radiology Patient Portal
Arnold CW, McNamara M, Chen S, Taira R, Bui AAT
Journal of the American Medical Informatics Association
2013
  
A Topic Model of Clinical Reports
Arnold CW, Speier W
ACM Special Interest Group on Information Retrieval
2012
  
Robust Skull Stripping of Clinical Glioblastoma Multiforme Data
Speier W, Iglesias JE, El-Kara L, Tu Z, Arnold CW
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
2011
  
Clinical Case-based Retrieval using Latent Topic Analysis
Arnold CW, El-Saden SM, Bui AAT, Taira RK
Proc. of the American Medical Informatics Association (AMIA) Annual Symposium
2010